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Neves, Aitana; Walther, Daniel; Martin-Campos, Trinidad; Barbie, Valerie; Bertelli, Claire; Blanc, Dominique; Bouchet, Gérard; Erard, Frédéric; Greub, Gilbert; Hirsch, Hans H; Huber, Michael; Kaiser, Laurent; Leib, Stephen L; Leuzinger, Karoline; Lazarevic, Vladimir; Mäusezahl, Mirjam; Molina, Jorge; Neher, Richard A; Perreten, Vincent; Ramette, Alban; ... (2023). The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata. Microbial genomics, 9(5) Microbiology Society 10.1099/mgen.0.001001
Magoye, Electine; Nägeli, Lukas; Bühlmann, Andreas; Hilber-Bodmer, Maja; Keller, Peter; Mühlethaler, Konrad; Riat, Arnaud; Schrenzel, Jacques; Freimoser, Florian M (2023). Clinical Aureobasidium Isolates Are More Fungicide Sensitive than Many Agricultural Isolates. (In Press). Microbiology spectrum, 11(2), e0529922. American Society for Microbiology 10.1128/spectrum.05299-22
Cuénod, Aline; Aerni, Martina; Bagutti, Claudia; Bayraktar, Banu; Boz, Efe Serkan; Carneiro, Cynthia Beisert; Casanova, Carlo; Coste, Alix T; Damborg, Peter; van Dam, Dick; Demirci, Mehmet; Drevinek, Pavel; Dubuis, Olivier; Fernandez, José; Greub, Gilbert; Hrabak, Jaroslav; Yiğitler, Gülen Hürkal; Hurych, Jakub; Jensen, Thøger Gorm; Jost, Géraldine; ... (2023). Quality of MALDI-TOF Mass Spectra in Routine Diagnostics: Results from an International External Quality Assessment including 36 Laboratories from 12 countries using 47 challenging bacterial strains. Clinical microbiology and infection, 29(2), pp. 190-199. Elsevier 10.1016/j.cmi.2022.05.017
Friedli, Olivier; Völlmy, Irene; Schrenzel, Jacques; Harbarth, Stephan; Kronenberg, Andreas (2022). Retrospective data analysis for definition of multidrug resistance in gram-negative bacteria - a consensus proposal. Swiss medical weekly, 152(w30195), w30195. EMH Media 10.4414/smw.2022.w30195
Balmer, Lisa; Seth-Smith, Helena M B; Egli, Adrian; Casanova, Carlo; Kronenberg, Andreas Oskar; Schrenzel, Jacques; Marschall, Jonas; Sommerstein, Rami (2022). Agrobacterium species bacteraemia, Switzerland, 2008 to 2019: a molecular epidemiological study. Antimicrobial resistance and infection control, 11(1), p. 47. BioMed Central 10.1186/s13756-022-01086-y
Ramette, Alban; Gasser, Michael; Nordmann, Patrice; Zbinden, Reinhard; Schrenzel, Jacques; Perisa, Damir; Kronenberg, Andreas (2021). Temporal and regional incidence of carbapenemase-producing Enterobacterales, Switzerland, 2013 to 2018. Eurosurveillance, 26(15) European Centre for Disease Prevention and Control 10.2807/1560-7917.ES.2021.26.15.1900760
Genton, Laurence; Lazarevic, Vladimir; Stojanovic, Ozren; Spiljar, Martina; Djaafar, Souad; Koessler, Thibaud; Dutoit, Valérie; Gaïa, Nadia; Mareschal, Julie; Macpherson, Andrew James; Herrmann, Francois; Trajkovski, Mirko; Schrenzel, Jacques (2021). Metataxonomic and Metabolic Impact of Fecal Microbiota Transplantation From Patients With Pancreatic Cancer Into Germ-Free Mice: A Pilot Study. Frontiers in cellular and infection microbiology, 11, p. 752889. Frontiers 10.3389/fcimb.2021.752889
Dylus, David; Pillonel, Trestan; Opota, Onya; Wüthrich, Daniel; Seth-Smith, Helena M. B.; Egli, Adrian; Leo, Stefano; Lazarevic, Vladimir; Schrenzel, Jacques; Laurent, Sacha; Bertelli, Claire; Blanc, Dominique S.; Neuenschwander, Stefan; Ramette, Alban; Falquet, Laurent; Imkamp, Frank; Keller, Peter M.; Kahles, Andre; Oberhaensli, Simone; Barbié, Valérie; ... (2020). NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test. Frontiers in Microbiology, 11, p. 591093. Frontiers 10.3389/fmicb.2020.591093
Egli, Adrian; Battegay, Manuel; Büchler, Andrea C; Bühlmann, Peter; Calandra, Thierry; Eckert, Philippe; Furrer, Hansjakob; Greub, Gilbert; Jakob, Stephan M.; Kaiser, Laurent; Leib, Stephen L.; Marsch, Stephan; Meinshausen, Nicolai; Pagani, Jean-Luc; Pugin, Jerome; Rätsch, Gunnar; Schrenzel, Jacques; Schüpbach, Reto; Siegemund, Martin; Zamboni, Nicola; ... (2020). SPHN/PHRT: Forming a Swiss-Wide Infrastructure for Data-Driven Sepsis Research. Studies in health technology and informatics, 270, pp. 1163-1167. IOS Press 10.3233/SHTI200346
Egli, Adrian; Koch, Daniel; Danuser, Jürg; Hendriksen, Rene S; Driesen, Susanne; Schmid, Diana Coman; Neher, Richard; Mäusezahl, Mirjam; Seth-Smith, Helena Mb; Bloemberg, Guido; Tschudin-Sutter, Sarah; Endimiani, Andrea; Perreten, Vincent; Greub, Gilbert; Schrenzel, Jacques; Stephan, Roger (2020). Symposium report: One Health meets sequencing. Microbes and infection, 22(1), pp. 1-7. Elsevier Masson SAS 10.1016/j.micinf.2019.07.004
Choutko, Vassili; Lazarevic, Vladimir; Gaïa, Nadia; Girard, Myriam; Renzi, Gesuele; Leo, Stefano; Keller, Peter M.; Huber, Christoph; Schrenzel, Jacques (2019). Rare Case of Community-Acquired Endocarditis Caused by Neisseria meningitidis Assessed by Clinical Metagenomics. Frontiers in cardiovascular medicine, 6, p. 112. Frontiers 10.3389/fcvm.2019.00112
Fabbiano, Salvatore; Suárez-Zamorano, Nicolas; Chevalier, Claire; Lazarević, Vladimir; Kieser, Silas; Rigo, Dorothée; Leo, Stefano; Veyrat-Durebex, Christelle; Gaïa, Nadia; Maresca, Marcello; Merkler, Doron; Gomez de Agüero Tamargo, Maria de la Mercedes; Macpherson, Andrew; Schrenzel, Jacques; Trajkovski, Mirko (2018). Functional Gut Microbiota Remodeling Contributes to the Caloric Restriction-Induced Metabolic Improvements. Cell metabolism, 28(6), 907-921.e7. Cell Press 10.1016/j.cmet.2018.08.005
Egli, Adrian; Blanc, Dominique S; Greub, Gilbert; Keller, Peter Michael; Lazarevic, Vladimir; Lebrand, Aitana; Leib, Stephen; Neher, Richard A; Perreten, Vincent; Ramette, Alban; Schrenzel, Jacques; Stephan, Roger; Wagner, Karolin; Wuethrich, Daniel; Xenarios, Ioannis (2018). Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform. Swiss medical weekly, 148(w14693), w14693. EMH Media 10.4414/smw.2018.14693
Egli, Adrian; Greub, Gilbert; Suter, Franziska Marta; Schrenzel, Jacques (2018). Moderne Verfahren zur Bestimmung von Antibiotikaresistenzen. Swiss Medical Forum, 18(46), pp. 950-956. EMH Swiss Medical Publishers 10.4414/smf.2018.03403
Orasch, Christina; Mertz, Dominik; Garbino, Jorge; van Delden, Christian; Emonet, Stephane; Schrenzel, Jacques; Zimmerli, Stefan; Damonti, Lauro; Mühlethaler, Konrad; Imhof, Alexander; Ruef, Christian; Fehr, Jan; Zbinden, Reinhard; Boggian, Katia; Bruderer, Thomas; Flückiger, Ursula; Conen, Anna; Khanna, Nina; Frei, Reno; Bregenzer, Thomas; ... (2018). Fluconazole non-susceptible breakthrough candidemia after prolonged low-dose prophylaxis: a prospective FUNGINOS study. Journal of infection, 76(5), pp. 489-495. Elsevier 10.1016/j.jinf.2017.12.018
Damonti, Lauro; Erard, Véronique; Garbino, Jorge; Schrenzel, Jacques; Zimmerli, Stefan; Mühlethaler, Konrad; Imhof, Alexander; Zbinden, Reinhard; Fehr, Jan; Boggian, Katia; Bruderer, Thomas; Flückiger, Ursula; Frei, Reno; Orasch, Christina; Conen, Anna; Khanna, Nina; Bregenzer, Thomas; Bille, Jacques; Lamoth, Frédéric; Marchetti, Oscar; ... (2018). Correction to: Catheter retention as a consequence rather than a cause of unfavorable outcome in candidemia. Intensive care medicine, 44(3), pp. 405-407. Springer 10.1007/s00134-018-5081-4
Damonti, Lauro; Erard, Véronique; Garbino, Jorge; Schrenzel, Jacques; Zimmerli, Stefan; Mühlethaler, Konrad; Imhof, Alexander; Zbinden, Reinhard; Fehr, Jan; Boggian, Katia; Bruderer, Thomas; Flückiger, Ursula; Frei, Reno; Orasch, Christina; Conen, Anna; Khanna, Nina; Bregenzer, Thomas; Bille, Jacques; Lamoth, Frédéric; Marchetti, Oscar; ... (2017). Catheter retention as a consequence rather than a cause of unfavorable outcome in candidemia. Intensive care medicine, 43(6), pp. 935-939. Springer 10.1007/s00134-017-4737-9
Greub, Gilbert; Holliger, Christof; Sanglard, Dominique; Schrenzel, Jacques; Thiel, Volker; Viollier, Patrick (2016). The Swiss Society of Microbiology: Small Bugs, Big Questions and Cool Answers. CHIMIA, 70(12), pp. 874-877. Schweizerische Chemische Gesellschaft 10.2533/chimia.2016.874
Stucki, David; Ballif, Marie; Egger, Matthias; Furrer, Hansjakob; Altpeter, Ekkehardt; Battegay, Manuel; Droz, Sara Christine; Bruderer, Thomas; Coscolla, Mireia; Borrell, Sonia; Zürcher, Kathrin; Janssens, Jean-Paul; Calmy, Alexandra; Mazza Stalder, Jesica; Jaton, Katia; Rieder, Hans L; Pfyffer, Gaby E; Siegrist, Hans H; Hoffmann, Matthias; Fehr, Jan; ... (2016). Standard genotyping overestimates transmission of Mycobacterium tuberculosis among immigrants in a low incidence country. Journal of clinical microbiology, 54(7), pp. 1862-1870. American Society for Microbiology 10.1128/JCM.00126-16
Whiteson, Katrine L; Hernandez, David; Lazarevic, Vladimir; Gaia, Nadia; Farinelli, Laurent; François, Patrice; Pilo, Paola; Frey, Joachim; Schrenzel, Jacques (2014). A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonis. BMC Genomics, 15, p. 169. BioMed Central 10.1186/1471-2164-15-169
Fenner, Lukas; Egger, Matthias; Bodmer, Thomas; Furrer, Hansjakob; Ballif, Marie; Battegay, Manuel; Helbling, Peter; Fehr, Jan; Gsponer, Thomas; Rieder, Hans L.; Zwahlen, Marcel; Hoffmann, Matthias; Bernasconi, Enos; Cavassini, Matthias; Calmy, Alexandra; Dolina, Marisa; Frei, Reno; Janssens, Jean-Paul; Borrell, Sonia; Stucki, David; ... (2013). HIV infection disrupts the sympatric host-pathogen relationship in human tuberculosis. PLoS genetics, 9(3), e1003318. Public Library of Science 10.1371/journal.pgen.1003318
Fenner, Lukas; Gagneux, Sebastien; Janssens, Jean-Paul; Fehr, Jan; Cavassini, Matthias; Hoffmann, Matthias; Bernasconi, Enos; Schrenzel, Jacques; Bodmer, Thomas; Böttger, Erik C; Helbling, Peter; Egger, Matthias; for the Swiss HIV Cohort and Molecular Epidemiology of Tuberculo, (2012). Tuberculosis in HIV-Negative and HIV-Infected Patients in a Low-Incidence Country: Clinical Characteristics and Treatment Outcomes. PLoS ONE, 7(3), e34186. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0034186
Barbier, François; Lebeaux, David; Hernandez, David; Delannoy, Anne-Sophie; Caro, Valérie; François, Patrice; Schrenzel, Jacques; Ruppé, Etienne; Gaillard, Kevin; Wolff, Michel; Brisse, Sylvain; Andremont, Antoine; Ruimy, Raymond (2011). High prevalence of the arginine catabolic mobile element in carriage isolates of methicillin-resistant Staphylococcus epidermidis. Journal of antimicrobial chemotherapy, 66(1), pp. 29-36. Oxford University Press 10.1093/jac/dkq410
Barbier, François; Ruppé, Etienne; Hernandez, David; Lebeaux, David; Francois, Patrice; Felix, Benjamin; Desprez, Adeline; Maiga, Aminata; Woerther, Paul-Louis; Gaillard, Kevin; Jeanrot, Cécile; Wolff, Michel; Schrenzel, Jacques; Andremont, Antoine; Ruimy, Raymond (2010). Methicillin-Resistant Coagulase-Negative Staphylococci in the Community: High Homology of SCCmec IVa between Staphylococcus epidermidis and Major Clones of Methicillin-Resistant Staphylococcus aureus. Journal of infectious diseases, 202(2), pp. 270-281. Oxford University Press 10.1086/653483
Ferry, T.; Uçkay, I.; Vaudaux, P.; François, P.; Schrenzel, Jacques; Harbarth, S.; Laurent, F.; Bernard, L.; Vandenesch, F.; Etienne, J.; Hoffmeyer, P.; Lew, D. (2010). Risk factors for treatment failure in orthopedic device-related methicillin-resistant Staphylococcus aureus infection. European journal of clinical microbiology & infectious diseases, 29(2), pp. 171-180. Springer 10.1007/s10096-009-0837-y
Myers, Catherine; Aggoun, Yacine; Gervaix, Alain; Ninet, Beatrice; Schrenzel, Jacques; Kuhnert, Peter (2007). Postoperative gram-negative anaerobic bacterial endocarditis. Pediatric infectious disease journal, 26(4), p. 369. Hagerstown, Md.: Lippincott Williams & Wilkins 10.1097/01.inf.0000258694.43509.05
Uçkay, Ilker; Rohner, Peter; Bolivar, Ignacio; Ninet, Béatrice; Djordjevic, Marina; Nobre, Vandack; Garzoni, Christian; Schrenzel, Jacques (2007). Streptococcus sinensis endocarditis outside Hong Kong. Emerging infectious diseases, 13(8), pp. 1250-1252. Atlanta, Ga.: U.S. National Center for Infectious Diseases
Garzoni, Christian; Francois, Patrice; Huyghe, Antoine; Couzinet, Sabine; Tapparel, Caroline; Charbonnier, Yvan; Renzoni, Adriana; Lucchini, Sacha; Lew, Daniel P; Vaudaux, Pierre; Kelley, William L; Schrenzel, Jacques (2007). A global view of Staphylococcus aureus whole genome expression upon internalization in human epithelial cells. BMC Genomics, 8, p. 171. London: BioMed Central 10.1186/1471-2164-8-171
Francois, Patrice; Garzoni, Christian; Bento, Manuela; Schrenzel, Jacques (2007). Comparison of amplification methods for transcriptomic analyses of low abundance prokaryotic RNA sources. Journal of microbiological methods, 68(2), pp. 385-91. Amsterdam: Elsevier 10.1016/j.mimet.2006.09.022
Spahr, Laurent; Cerny, Andreas; Morard, Isabelle; Rubbia-Brandt, Laura; Schrenzel, Jacques (2006). Acute partial Budd-Chiari syndrome and portal vein thrombosis in cytomegalovirus primary infection: a case report. BMC gastroenterology, 6, p. 10. London: BioMed Central 10.1186/1471-230X-6-10
Korczak, Bozena; Frey, Joachim; Schrenzel, Jacques; Pluschke, Gerd; Pfister, Riccardo; Ehricht, Ralf; Kuhnert, Peter (2005). Use of diagnostic microarrays for determination of virulence gene patterns of Escherichia coli K1, a major cause of neonatal meningitis. Journal of clinical microbiology, 43(3), pp. 1024-1031. Washington, D.C.: American Society for Microbiology 10.1128/JCM.43.3.1024-1031.2005
