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Bai, Xiaopeng; De Palma, Giada; Boschetti, Elisa; Nishihara, Yuichiro; Lu, Jun; Shimbori, Chiko; Costanzini, Anna; Saqib, Zarwa; Kraimi, Narjis; Sidani, Sacha; Hapfelmeier, Siegfried; Macpherson, Andrew J; Verdu, Elena F; De Giorgio, Roberto; Collins, Stephen M; Bercik, Premysl (2024). Vasoactive intestinal polypeptide plays a key role in the microbial-neuroimmune control of intestinal motility. Cellular and molecular gastroenterology and hepatology, 17(3), pp. 383-398. Elsevier 10.1016/j.jcmgh.2023.11.012
Cecchini, Luca; Barmaz, Colette; Coloma Cea, Maria José; Baeschlin, Hannah; Etter, Julian; Netzer, Stefanie; Bregy, Leonie; Marchukov, Dmitrij; Fernandez Trigo, Nerea; Meier, Rachel; Hirschi, Jasmin; Wyss, Jacqueline; Wick, Andrina; Zingg, Joelle; Christensen, Sandro; Radan, Anda-Petronela; Etter, Annina; Müller, Martin; Kaess, Michael; Surbek, Daniel; ... (2023). The Bern Birth Cohort (BeBiCo) to study the development of the infant intestinal microbiota in a high-resource setting in Switzerland: rationale, design, and methods. BMC pediatrics, 23(1), p. 560. BioMed Central 10.1186/s12887-023-04198-5
Macpherson, Andrew J; Pachnis, Vassilis; Prinz, Marco (2023). Boundaries and integration between microbiota, the nervous system, and immunity. Immunity, 56(8), pp. 1712-1726. Elsevier 10.1016/j.immuni.2023.07.011
Grant, Erica T; Boudaud, Marie; Muller, Arnaud; Macpherson, Andrew J; Desai, Mahesh S (2023). Maternal diet and gut microbiome composition modulate early-life immune development. EMBO molecular medicine, 15(8), e17241. EMBO Press 10.15252/emmm.202217241
Cansever, Dilay; Petrova, Ekaterina; Krishnarajah, Sinduya; Mussak, Caroline; Welsh, Christina A; Mildenberger, Wiebke; Mulder, Kevin; Kreiner, Victor; Roussel, Elsa; Stifter, Sebastian A; Andreadou, Myrto; Zwicky, Pascale; Jurado, Nicole Puertas; Rehrauer, Hubert; Tan, Ge; Liu, Zhaoyuan; Blériot, Camille; Ronchi, Francesca; Macpherson, Andrew J; Ginhoux, Florent; ... (2023). Lactation-associated macrophages exist in murine mammary tissue and human milk. Nature immunology, 24(7), pp. 1098-1109. Springer Nature 10.1038/s41590-023-01530-0
Meier, Karin H U; Trouillon, Julian; Li, Hai; Lang, Melanie; Fuhrer, Tobias; Zamboni, Nicola; Sunagawa, Shinichi; Macpherson, Andrew J; Sauer, Uwe (2023). Metabolic landscape of the male mouse gut identifies different niches determined by microbial activities. Nature metabolism, 5(6), pp. 968-980. Springer Nature 10.1038/s42255-023-00802-1
Duan, Jinzhi; Matute, Juan D; Unger, Lukas W; Hanley, Thomas; Schnell, Alexandra; Lin, Xi; Krupka, Niklas; Griebel, Paul; Lambden, Conner; Sit, Brandon; Grootjans, Joep; Pyzik, Michal; Sommer, Felix; Kaiser, Sina; Falk-Paulsen, Maren; Grasberger, Helmut; Kao, John Y; Fuhrer, Tobias; Li, Hai; Paik, Donggi; ... (2023). Endoplasmic reticulum stress in the intestinal epithelium initiates purine metabolite synthesis and promotes Th17 cell differentiation in the gut. Immunity, 56(5), 1115-1131.e9. Elsevier 10.1016/j.immuni.2023.02.018
Macpherson, Andrew J; Sauer, Uwe (2023). Secrets of microbiota drug metabolism. Nature medicine, 29(3), pp. 537-538. Nature Publishing Group 10.1038/s41591-023-02227-5
Papotto, Pedro H; Yilmaz, Bahtiyar; Pimenta, Gonçalo; Mensurado, Sofia; Cunha, Carolina; Fiala, Gina J; Gomes da Costa, Daniel; Gonçalves-Sousa, Natacha; Chan, Brian H K; Blankenhaus, Birte; Domingues, Rita G; Carvalho, Tânia; Hepworth, Matthew R; Macpherson, Andrew J; Allen, Judith E; Silva-Santos, Bruno (2023). Maternal γδ T cells shape offspring pulmonary type 2 immunity in a microbiota-dependent manner. Cell reports, 42(2), p. 112074. Cell Press 10.1016/j.celrep.2023.112074
Kennedy, Katherine M; de Goffau, Marcus C; Perez-Muñoz, Maria Elisa; Arrieta, Marie-Claire; Bäckhed, Fredrik; Bork, Peer; Braun, Thorsten; Bushman, Frederic D; Dore, Joel; de Vos, Willem M; Earl, Ashlee M; Eisen, Jonathan A; Elovitz, Michal A; Ganal-Vonarburg, Stephanie C; Gänzle, Michael G; Garrett, Wendy S; Hall, Lindsay J; Hornef, Mathias W; Huttenhower, Curtis; Konnikova, Liza; ... (2023). Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature, 613(7945), pp. 639-649. Macmillan Journals Ltd. 10.1038/s41586-022-05546-8
Yilmaz, Bahtiyar; Fuhrer, Tobias; Morgenthaler, Deborah; Krupka, Niklas; Wang, Daoming; Spari, Daniel; Candinas, Daniel; Misselwitz, Benjamin; Beldi, Guido; Sauer, Uwe; Macpherson, Andrew J (2022). Plasticity of the adult human small intestinal stoma microbiota. Cell host & microbe, 30(12), 1773-1787.e6. Cell Press 10.1016/j.chom.2022.10.002
Rollenske, Tim; Macpherson, Andrew J (2022). "'ELO, world!"-Early-life origins of B cells. Immunity, 55(10), pp. 1753-1755. Elsevier 10.1016/j.immuni.2022.09.012
Perruzza, Lisa; Strati, Francesco; Raneri, Matteo; Li, Hai; Gargari, Giorgio; Rezzonico-Jost, Tanja; Palatella, Martina; Kwee, Ivo; Morone, Diego; Seehusen, Frauke; Sonego, Paolo; Donati, Claudio; Franceschi, Pietro; Macpherson, Andrew J; Guglielmetti, Simone; Greiff, Victor; Grassi, Fabio (2022). Apyrase-mediated amplification of secretory IgA promotes intestinal homeostasis. Cell reports, 40(3), p. 111112. Cell Press 10.1016/j.celrep.2022.111112
Schmidt, Florian; Zimmermann, Jakob; Tanna, Tanmay; Farouni, Rick; Conway, Tyrrell; Macpherson, Andrew J; Platt, Randall J (2022). Noninvasive assessment of gut function using transcriptional recording sentinel cells. Science, 376(6594), eabm6038. American Association for the Advancement of Science 10.1126/science.abm6038
Sudworth, Amanda; Segers, Filip M; Yilmaz, Bahtiyar; Guslund, Naomi C; Macpherson, Andrew J; Dissen, Erik; Qiao, Shuo-Wang; Inngjerdingen, Marit (2022). Innate lymphoid cell characterization in the rat and their correlation to gut commensal microbes. European journal of immunology, 52(5), pp. 717-729. Wiley 10.1002/eji.202149639
Macpherson, Andrew J; Yilmaz, Bahtiyar (2022). Microbial drivers of DSS variability. Nature microbiology, 7(4), pp. 478-479. Springer Nature 10.1038/s41564-022-01097-w
Shmeleva, Evgeniya V; Gomez de Agüero, Mercedes; Wagner, Josef; Enright, Anton J; Macpherson, Andrew J; Ferguson, Brian J; Smith, Geoffrey L (2022). Smallpox vaccination induces a substantial increase in commensal skin bacteria that promote pathology and influence the host response. PLoS pathogens, 18(4), e1009854. Public Library of Science 10.1371/journal.ppat.1009854
Mossad, Omar; Batut, Bérénice; Yilmaz, Bahtiyar; Dokalis, Nikolaos; Mezö, Charlotte; Nent, Elisa; Nabavi, Lara Susann; Mayer, Melanie; Maron, Feres José Mocayar; Buescher, Joerg M; Gomez de Agüero, Mercedes; Szalay, Antal; Lämmermann, Tim; Macpherson, Andrew J; Ganal-Vonarburg, Stephanie C; Backofen, Rolf; Erny, Daniel; Prinz, Marco; Blank, Thomas (2022). Gut microbiota drives age-related oxidative stress and mitochondrial damage in microglia via the metabolite N6-carboxymethyllysine. Nature neuroscience, 25(3), pp. 295-305. Nature America 10.1038/s41593-022-01027-3
Sankowski, Roman; Ahmari, Jasmin; Mezö, Charlotte; Hrabě de Angelis, Anna Lena; Fuchs, Vidmante; Utermöhlen, Olaf; Buch, Thorsten; Blank, Thomas; Gomez de Agüero, Mercedes; Macpherson, Andrew J; Erny, Daniel (2021). Commensal microbiota divergently affect myeloid subsets in the mammalian central nervous system during homeostasis and disease. The EMBO journal, 40(23), e108605. EMBO Press 10.15252/embj.2021108605
Erny, Daniel; Dokalis, Nikolaos; Mezö, Charlotte; Castoldi, Angela; Mossad, Omar; Staszewski, Ori; Frosch, Maximilian; Villa, Matteo; Fuchs, Vidmante; Mayer, Arun; Neuber, Jana; Sosat, Janika; Tholen, Stefan; Schilling, Oliver; Vlachos, Andreas; Blank, Thomas; Gomez de Agüero, Mercedes; Macpherson, Andrew J; Pearce, Edward J and Prinz, Marco (2021). Microbiota-derived acetate enables the metabolic fitness of the brain innate immune system during health and disease. Cell metabolism, 33(11), 2260-2276.e7. Elsevier 10.1016/j.cmet.2021.10.010
Bravo, Francisco; Kapoglou, Ioannis; Bionda, Marion; Macpherson, Andrew J; Krupka, Niklas (2021). Progressive malnutrition despite percutaneous endoscopic gastrostomy. Frontline gastroenterology, 12(6), pp. 535-536. BMJ Publishing Group 10.1136/flgastro-2020-101413
Schreiner, Philipp; Yilmaz, Bahtiyar; Rossel, Jean-Benoît; Franc, Yannick; Misselwitz, Benjamin; Scharl, Michael; Zeitz, Jonas; Frei, Pascal; Greuter, Thomas; Vavricka, Stephan R; Pittet, Valérie; Siebenhüner, Alexander; Juillerat, Pascal; von Känel, Roland; Macpherson, Andrew J; Rogler, Gerhard; Biedermann, Luc (2019). Vegetarian or gluten-free diets in patients with inflammatory bowel disease are associated with lower psychological well-being and a different gut microbiota, but no beneficial effects on the course of the disease. United european gastroenterology journal, 7(6), pp. 767-781. Sage 10.1177/2050640619841249
Pittet, Valérie; Michetti, Pierre; Müller, Christoph; Braegger, Christian P; von Känel, Roland; Schoepfer, Alain; Macpherson, Andrew J; Rogler, Gerhard (2019). Cohort Profile Update: The Swiss Inflammatory Bowel Disease Cohort Study (SIBDCS). International journal of epidemiology, 48(2), 385-386f. Oxford University Press 10.1093/iJe/dyy298
Mager, Lukas Franz; Kölzer, Viktor Hendrik; Stuber Roos, Regula; Thoo Sin Lang, Lester; Keller, Irene; Köck, Ivonne; Langenegger, Maya; Simillion, Cedric; Pfister, Simona P; Faderl, Martin Richard; Genitsch Gratwohl, Vera; Tcymbarevich, Irina; Juillerat, Pascal; Li, Xiaohong; Xia, Yu; Karamitopoulou, Evanthia; Lyck, Ruth; Zlobec, Inti; Hapfelmeier, Siegfried Hektor; Bruggmann, Rémy; ... (2017). The ESRP1-GPR137 axis contributes to intestinal pathogenesis. eLife, 6 eLife Sciences Publications 10.7554/eLife.28366
Fritz, Jörg H; Rojas, Olga Lucia; Simard, Nathalie; McCarthy, Douglas D; Hapfelmeier, Siegfried; Rubino, Stephen; Robertson, Susan J; Larijani, Mani; Gosselin, Jean; Ivanov, Ivaylo I; Martin, Alberto; Casellas, Rafael; Philpott, Dana J; Girardin, Stephen E; McCoy, Kathy D; Macpherson, Andrew J; Paige, Christopher J; Gommerman, Jennifer L (2012). Acquisition of a multifunctional IgA+ plasma cell phenotype in the gut. Nature, 481(7380), pp. 199-203. London: Macmillan Journals Ltd. 10.1038/nature10698
Macpherson, Andrew J; Geuking, Markus B; Slack, Emma; Hapfelmeier, Siegfried; McCoy, Kathy D (2012). The habitat, double life, citizenship, and forgetfulness of IgA. Immunological reviews, 245(1), pp. 132-146. Oxford: Wiley-Blackwell 10.1111/j.1600-065X.2011.01072.x
Hooper, Lora V; Littman, Dan R; Macpherson, Andrew J (2012). Interactions between the microbiota and the immune system. Science, 336(6086), pp. 1268-73. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1223490
Macpherson, Andrew J; Geuking, Markus B; McCoy, Kathy D (2012). Homeland security: IgA immunity at the frontiers of the body. Trends in immunology, 33(4), pp. 160-7. Oxford: Elsevier Current Trends 10.1016/j.it.2012.02.002
Lindner, Cornelia; Wahl, Benjamin; Föhse, Lisa; Suerbaum, Sebastian; Macpherson, Andrew J; Prinz, Immo; Pabst, Oliver (2012). Age, microbiota, and T cells shape diverse individual IgA repertoires in the intestine. Journal of experimental medicine, 209(2), pp. 365-77. New York, N.Y.: Rockefeller University Press 10.1084/jem.20111980
Macpherson, Andrew J; Geuking, Markus B; McCoy, Kathy D (2012). Innate and adaptive immunity in host-microbiota mutualism. Frontiers in bioscience (Scholar edition), 4(2), pp. 685-698. Frontiers in bioscience
Geuking, Markus B; McCoy, Kathy D; Macpherson, Andrew J (2011). The continuum of intestinal CD4+ T cell adaptations in host-microbial mutualism. Gut microbes, 2(6), pp. 353-357. Austin, Tex.: Landes Bioscience 10.4161/gmic.18604
Shulzhenko, Natalia; Morgun, Andrey; Hsiao, William; Battle, Michele; Yao, Michael; Gavrilova, Oksana; Orandle, Marlene; Mayer, Lloyd; Macpherson, Andrew J; McCoy, Kathy D; Fraser-Liggett, Claire; Matzinger, Polly (2011). Crosstalk between B lymphocytes, microbiota and the intestinal epithelium governs immunity versus metabolism in the gut. Nature medicine, 17(12), pp. 1585-93. New York, N.Y.: Nature Publishing Group 10.1038/nm.2505
Macpherson, Andrew J; Geuking, Markus B; McCoy, Kathy D (2011). Immunoglobulin A: a bridge between innate and adaptive immunity. Current opinion in gastroenterology, 27(6), pp. 529-33. Philadelphia, Pa.: Lippincott Williams & Wilkins 10.1097/MOG.0b013e32834bb805
McCarthy, Douglas D; Kujawa, Julie; Wilson, Cheryl; Papandile, Adrian; Poreci, Urjana; Porfilio, Elisa A; Ward, Lesley; Lawson, Melissa A E; Macpherson, Andrew J; McCoy, Kathy D; Pei, York; Novak, Lea; Lee, Jeannette Y; Julian, Bruce A; Novak, Jan; Ranger, Ann; Gommerman, Jennifer L; Browning, Jeffrey L (2011). Mice overexpressing BAFF develop a commensal flora-dependent, IgA-associated nephropathy. Journal of clinical investigation, 121(10), pp. 3991-4002. Ann Arbor, Mich.: American Society for Clinical Investigation 10.1172/JCI45563
Güller, Ulrich; Macpherson, Andrew J (2011). [Abdominal pain - differential diagnoses and diagnostic strategies in patients with chronic symptoms]. Therapeutische Umschau, 68(8), pp. 459-62. Bern: Huber 10.1024/0040-5930/a000194
Geuking, Markus B; Cahenzli, Julia; Lawson, Melissa A E; Ng, Derek C K; Slack, Emma; Hapfelmeier, Siegfried; McCoy, Kathy D; Macpherson, Andrew J (2011). Intestinal bacterial colonization induces mutualistic regulatory T cell responses. Immunity, 34(5), pp. 794-806. Cambridge, Mass.: Cell Press 10.1016/j.immuni.2011.03.021
Haas, Anna; Zimmermann, Kathrin; Graw, Frederik; Slack, Emma; Rusert, Peter; Ledergerber, Bruno; Bossart, Walter; Weber, Rainer; Thurnheer, Maria C; Battegay, Manuel; Hirschel, Bernard; Vernazza, Pietro; Patuto, Nicola; Macpherson, Andrew J; Günthard, Huldrych F; Oxenius, Annette; Swiss HIV Cohort Study, (2011). Systemic antibody responses to gut commensal bacteria during chronic HIV-1 infection. Gut, 60(11), pp. 1506-19. London: BMJ Publishing Group 10.1136/gut.2010.224774
Reikvam, Dag Henrik; Erofeev, Alexander; Sandvik, Anders; Grcic, Vedrana; Jahnsen, Frode Lars; Gaustad, Peter; McCoy, Kathy D; Macpherson, Andrew J; Meza-Zepeda, Leonardo A; Johansen, Finn-Eirik (2011). Depletion of murine intestinal microbiota: effects on gut mucosa and epithelial gene expression. PLoS ONE, 6(3), e17996. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0017996
Hapfelmeier, Siegfried; Lawson, Melissa A E; Slack, Emma; Kirundi, Jorum K; Stoel, Maaike; Heikenwalder, Mathias; Cahenzli, Julia; Velykoredko, Yuliya; Balmer, Maria L; Endt, Kathrin; Geuking, Markus B; Curtiss, Roy; McCoy, Kathy D; Macpherson, Andrew J (2010). Reversible microbial colonization of germ-free mice reveals the dynamics of IgA immune responses. Science, 328(5986), pp. 1705-1709. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1188454
Hooper, Lora V; Macpherson, Andrew J (2010). Immune adaptations that maintain homeostasis with the intestinal microbiota. Nature reviews - immunology, 10(3), pp. 159-69. London: Nature Publishing Group 10.1038/nri2710
Stecher, Bärbel; Chaffron, Samuel; Käppeli, Rina; Hapfelmeier, Siegfried; Freedrich, Susanne; Weber, Thomas C; Kirundi, Jorum; Suar, Mrutyunjay; McCoy, Kathy D; von Mering, Christian; Macpherson, Andrew J; Hardt, Wolf-Dietrich (2010). Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria. PLoS pathogens, 6(1), e1000711. San Francisco, Calif.: Public Library of Science 10.1371/journal.ppat.1000711
Slack, Emma; Hapfelmeier, Siegfried; Stecher, Bärbel; Velykoredko, Yuliya; Stoel, Maaike; Lawson, Melissa A E; Geuking, Markus B; Beutler, Bruce; Tedder, Thomas F; Hardt, Wolf-Dietrich; Bercik, Premysl; Verdu, Elena F; McCoy, Kathy D; Macpherson, Andrew J (2009). Innate and adaptive immunity cooperate flexibly to maintain host-microbiota mutualism. Science, 325(5940), pp. 617-620. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1172747
Macpherson, Andrew J; Slack, Emma; Geuking, Markus B; McCoy, Kathy D (2009). The mucosal firewalls against commensal intestinal microbes. Seminars in immunopathology, 31(2), pp. 145-9. Berlin: Springer-Verlag 10.1007/s00281-009-0174-3
Heikenwalder, Mathias; Prinz, Marco; Zeller, Nicolas; Lang, Karl S; Junt, Tobias; Rossi, Simona; Tumanov, Alexei; Schmidt, Hauke; Priller, Josef; Flatz, Lukas; Rülicke, Thomas; Macpherson, Andrew J; Holländer, Georg A; Nedospasov, Sergei A; Aguzzi, Adriano (2008). Overexpression of lymphotoxin in T cells induces fulminant thymic involution. American journal of pathology, 172(6), pp. 1555-70. New York, N.Y.: Elsevier 10.2353/ajpath.2008.070572
Fink, Katja; Zellweger, Raphael; Weber, Jacqueline; Manjarrez-Orduno, Nataly; Holdener, Martin; Senn, Beatrice M; Hengartner, Hans; Zinkernagel, Rolf M; Macpherson, Andrew J (2008). Long-term maternal imprinting of the specific B cell repertoire by maternal antibodies. European journal of immunology, 38(1), pp. 90-101. Weinheim: Wiley-VCH 10.1002/eji.200737872
McCoy, Kathy D; Stoel, Maaike; Stettler, Rebecca; Merky, Patrick; Fink, Katja; Senn, Beatrice M; Schaer, Corinne; Massacand, Joanna; Odermatt, Bernhard; Oettgen, Hans C; Zinkernagel, Rolf M; Bos, Nicolaas A; Hengartner, Hans; Macpherson, Andrew J; Harris, Nicola L (2008). Polyclonal and specific antibodies mediate protective immunity against enteric helminth infection. Cell host & microbe, 4(4), pp. 362-73. Cambridge, Mass.: Cell Press 10.1016/j.chom.2008.08.014
Macpherson, Andrew J; Hapfelmeier, Siegfried; McCoy, Kathy D (2007). The armed truce between the intestinal microflora and host mucosal immunity. Seminars in immunology, 19(2), pp. 57-58. W.B. Saunders 10.1016/j.smim.2007.04.001
Stecher, Bärbel; Macpherson, Andrew J; Hapfelmeier, Siegfried; Kremer, Marcus; Stallmach, Thomas; Hardt, Wolf-Dietrich (2005). Comparison of Salmonella enterica serovar Typhimurium colitis in germfree mice and mice pretreated with streptomycin. Infection and immunity, 73(6), pp. 3228-3241. American Society for Microbiology 10.1128/IAI.73.6.3228-3241.2005
Flückiger, Miriam; Oikonomou, Vasileios; Linas, Ioannis; Dettmer, Matthias; Dawson, Heather; Macpherson, Andrew J (2018). How Lymphogranuloma venereum mimics inflammatory bowel disease-a case report. Swiss medical weekly, 148, 18S-18S. EMH Schweizerischer Ärzteverlag
